AtGenExpress

NEW Interactive visualization of AtGenExpress developmental data

 

READ ME - Development

To cite data from the developmental set, please refer to:

Schmid, M., Davison, T. S., Henz, S. R., Pape, U. J., Demar, M., Vingron, M. Schölkopf, B. Weigel, D., and Lohmann, J. (2005) A gene expression map of Arabidopsis development. Nature Genetics, 37, 501-506. Download here.

Sample list (Development)

AtGenExpress developmental series sample list and description

Seed sample information

Details on seed samples generated by the group of Bernd Weisshaar

Probe preparation (Development)

AtGenExpress developmental series probe preparation protocol

Expression data (Development)

AtGenExpress (Development) expression estimates by gcRMA

Marker genes (Development) from Schmid et al., 2005

Marker genes for different tissues as shown in Figure 1c of Schmid et al. (2005) Nat. Genet. 37, 501-506.

Sample list (Abiotic stress)

AtGenExpress abiotic stress series sample list and description

Expression data (Abiotic stress)

AtGenExpress (Abiotic stress) expression estimates by gcRMA

Sample list (Ecotypes)

AtGenExpress ecotypes series sample list and description

Paper (Abiotic stress)

To cite data from the abiotic stress set, please refer to:

Kilian, J., Whitehead, D., Horak, J., Wanke, D., Weinl, S., Batistic, O., D'Angelo, Bornberg-Bauer, E., Kudla, J., and Harter, K. (2007) The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J. 50, 347-363.

Expression data (Ecotypes)

AtGenExpress (Ecotypes) expression estimates by gcRMA

Sample list (Pathogen)

AtGenExpress pathogen series sample list and description

Expression data (Pathogen)

AtGenExpress (Pathogen) expression estimates by gcRMA

Sample List (Light)

AtGenExpress light series sample list and description

Expression data (Light)

AtGenExpress (Light) expression estimates by gcRMA